The Best Vegan Stuffed Tomatoes: A Healthy, Flavorful & Easy Plant-Based Recipe
Say goodbye to bland, boring tomatoes and hello to an exciting, flavorful side dish or a satisfying main course with these incredible **Vegan Stuffed Tomatoes**. This recipe transforms simple fresh tomatoes into a delightful culinary experience that is both sweet and savory, packed with plant-based goodness. While completely vegan, the rich, umami-filled stuffing gives the illusion of a hearty, “meaty” and “cheesy” dish, making it wonderfully satisfying for everyone. This easy recipe for **baked stuffed tomatoes** is versatile enough for a quick weekday plant-based dinner, a elegant healthy side dish for guests, or even a delightful brunch option. Prepare to impress with a dish that’s not only healthy and delicious but also incredibly easy to make!

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When fresh, ripe tomatoes are in peak season, there’s nothing quite like slicing them thick, sprinkling with coarse salt and fresh black pepper, and adding a splash of balsamic vinegar. It’s a simple pleasure. However, these **Vegan Stuffed Tomatoes** have become such a staple in my kitchen that I find myself making them multiple times a week! They truly elevate the humble tomato into something extraordinary.
Each juicy, ripe tomato is generously filled with a flavorful and highly satisfying quinoa and vegetable mixture, then baked until perfectly tender with a slightly crispy topping. If you’ve never experienced the joy of baked stuffed tomatoes, you are in for an absolute treat. This particular **stuffed tomato recipe** is guaranteed to earn rave reviews from family and friends alike. It’s a complete meal in one neat package, showcasing the natural sweetness of tomatoes complemented by a savory, aromatic stuffing.
For those avoiding dairy, I have fantastic news! There’s no need for traditional parmesan cheese or even highly processed vegan alternatives. The secret ingredient here is nutritional yeast, which miraculously imparts a wonderful cheesy flavor to the stuffing without any dairy whatsoever. This is a huge win for anyone looking for a **dairy-free stuffed tomato recipe** that doesn’t compromise on taste or texture. Indeed, these **healthy stuffed tomatoes** truly have it all!
Why You’ll Love These Vegan Stuffed Tomatoes

- Unbelievably Delicious & Satisfying: These aren’t just good for being vegan; they’re simply delicious! The combination of sweet tomatoes and savory, umami-rich filling creates a truly satisfying meal that will leave you feeling nourished and content.
- Allergy-Friendly & Inclusive: This recipe is naturally **dairy-free, nut-free, vegan, and gluten-free**, making it an excellent choice for a wide range of dietary needs and preferences. It’s perfect for sharing with diverse groups of eaters!
- Budget-Friendly & Seasonal: During peak tomato season (typically May through October), fresh tomatoes are abundant and affordable. If you’re lucky enough to grow your own, this recipe is a fantastic way to utilize your harvest, making it incredibly budget-friendly.
- Hearty & Flavorful Filling: The stuffing features a robust mixture of quinoa and mushrooms, providing a fantastic “meaty” texture and a deep umami flavor. Nutritional yeast adds that delightful “cheesy” essence, proving that rich, comforting flavors are entirely possible in a **plant-based stuffed tomato**.
- Perfect for Meal Prep: These **baked stuffed tomatoes** are excellent for meal prepping. You can make the filling ahead of time or bake the entire dish for easy grab-and-go lunches or dinners throughout the week. They taste just as good, if not better, the next day!
- Versatile for Any Occasion: Whether you need a quick and easy weeknight dinner for your family or an elegant dish to serve at a brunch, potluck, or dinner party, these **healthy stuffed tomatoes** fit the bill perfectly.
- Utilize Your Garden Bounty: Have an abundance of various tomatoes from your garden? This recipe is incredibly forgiving and works wonderfully with different types, from beefsteaks to Romas, allowing you to get creative with your harvest.
- Light Lunch or Side Dish: Serve them as a light, yet fulfilling lunch alongside a simple green salad, or present them as a vibrant and nutritious side dish with your favorite main.
Essential Ingredients for Baked Stuffed Tomatoes

Gathering fresh, high-quality ingredients is key to making the most delicious **vegan stuffed tomatoes**. Here’s a breakdown of what you’ll need:
- Whole Tomatoes: The star of the show! For the best results, use fresh, in-season tomatoes. Beefsteak tomatoes, large heirloom varieties, or sturdy Roma tomatoes work exceptionally well due to their size and shape, making them easier to stuff. Tomatoes are a nutritional powerhouse, known for boosting the immune system (thanks to Vitamin C and potassium), strengthening bones (with Vitamin K, calcium, and lycopene), and promoting digestive health (high in fiber and water).
- Quinoa: While some recipes opt for a rice mixture, I highly recommend quinoa for its superior texture and higher protein content. Technically a seed, not a grain, quinoa adds a fantastic, fluffy texture and makes the stuffing incredibly satisfying and nutrient-dense, contributing to a truly **healthy stuffed tomato** option.
- Mushrooms: Shiitake mushrooms are my top choice for their rich, earthy flavor and firm, “meaty” texture, which makes these truly the **best stuffed tomatoes**. However, don’t hesitate to use portobello or even common button mushrooms if shiitakes aren’t available – they will still add wonderful umami depth.
- Onions: Any sweet white or red onion will do. They provide a foundational aromatic base for the stuffing. For a subtle flavor variation, you could also experiment with leeks, finely diced fennel, or green onions.
- Garlic: Fresh garlic is indispensable for a robust flavor profile. For the best results, use a microplane grater or mince the cloves finely. A pro tip: allow minced garlic to sit for at least 10 minutes before cooking. This simple step helps the healthy compounds oxidize and fully develop their flavor and benefits.
- Greens: Chopped kale is an excellent choice as it holds up beautifully to the heat of the oven, maintaining its texture and nutritional value. Other hearty greens like collard greens, Swiss chard, elephant kale, Russian kale, or even tender spinach can be used.
- Fresh Herbs: Thinly sliced fresh basil adds a bright, aromatic finish. Feel free to use a combination of fresh parsley, thyme, or oregano to complement the Italian seasoning and elevate the overall flavor of your **stuffed tomatoes**.
- Spices: A pinch of salt and pepper is crucial for seasoning the inside of the hollowed-out tomatoes directly; otherwise, they can taste a bit bland despite the flavorful stuffing. Italian seasoning is incorporated directly into the filling, infusing it with classic, comforting flavors.
- Nutritional Yeast: This is your secret weapon for a “cheesy” taste without dairy! A small amount goes a long way in providing that savory, umami, and cheesy essence, perfect for **dairy-free stuffed tomatoes**. Plus, it’s a good source of fiber and Vitamin B12.
- Olive Oil (or Vegetable Broth): For sautéing your aromatics. Use olive oil for richness, or vegetable broth for an oil-free option.
Choosing the Best Tomatoes for Stuffing
Selecting the right tomatoes is essential for successful **baked stuffed tomatoes**. Larger tomatoes are generally much easier to work with. While grape or cherry tomatoes are delicious, they won’t work well for this recipe due to their small size.
The ideal tomatoes for stuffing include:
- Beefsteak Tomatoes: Large, sturdy, and perfect for holding a generous amount of filling.
- Heirloom Tomatoes: If they are large and firm, heirlooms can add beautiful color and unique flavor.
- Large Roma Tomatoes (Plum Tomatoes): Their oval shape makes them easy to scoop and stuff. San Marzano varieties are particularly excellent if you can find them.
When selecting your tomatoes, look for ones that are still a bit firm to the touch, uniform in size for even cooking, and have smooth, unblemished skins. If your tomatoes wobble or don’t sit flat in the baking dish, you can always slice a very thin sliver off the bottom to create a stable base, just be careful not to cut through to the cavity!
As a first choice, always opt for whatever tomatoes are growing in your garden or are available fresh from your local farmers’ market. The flavor of truly ripe, in-season tomatoes is unparalleled. Grocery store tomatoes labeled “locally grown” are another great option. Remember, tomato season typically runs from May through October, so take advantage of this bounty!
More Healthy Fresh Tomato Recipes
If you’ve been blessed with a bumper crop of tomatoes (I may have overplanted myself!), definitely share some with your friends and neighbors, but be sure to keep plenty for yourself so you can try some of these other delicious **Vegan Tomato Recipes**:
- Tomato Salad with Balsamic Dressing
- Gluten-Free Tabbouleh
- Summer Pasta Salad
- Fresh Tomato Salsa
- Roasted Tomato Sauce
- Beans and Greens
- Roasted Cherry Tomatoes
- Flatbread with Tomatoes, Pesto, and Corn
How to Make Baked Stuffed Tomatoes: A Step-by-Step Guide
Quick Tip for Quinoa: If you don’t have leftover cooked quinoa on hand, it’s easy to prepare. Simply rinse ½ cup of dry quinoa thoroughly under running water, then add it to a small saucepan with 1 ½ cups of boiling water. Reduce the heat to low, maintaining a slow simmer, and cook for about 15 minutes, or until all the water has been absorbed and the quinoa is fluffy. This yields approximately 1.5 cups cooked quinoa.
Making these **vegan stuffed tomatoes** is a straightforward process, but proper preparation makes all the difference. Follow these steps for perfect results:

The initial step is to prepare your tomatoes for baking. Start by carefully slicing off the very top of each tomato, about ¼ inch down. This creates an opening to access the interior. The easiest way to scoop out the insides of the tomatoes is to use a grapefruit spoon or a small paring knife, carefully hollowing out the pulp and seeds while keeping the outer shell intact.

Decide if you want to use the tomato tops for an elegant presentation; if so, set them aside. Otherwise, dice the tops along with the scooped-out tomato pulp and reserve them to incorporate into the savory stuffing. Be sure to discard any tough cores or excessive seeds. This helps ensure a rich flavor without making the filling too watery.

If your hollowed-out tomatoes don’t sit flat and stable, carefully slice a very thin piece off the bottom to create a level base, ensuring they won’t wobble in the baking pan. Crucially, after scooping, place the tomatoes upside down on a plate. This allows any excess liquid to drain out, preventing your **stuffed tomatoes** from becoming watery during baking.

While your tomatoes are draining, it’s time to prep the rest of your ingredients. This stage is all about efficiency – once the pan heats up, the filling comes together very quickly. Finely dice your onion and mushrooms, mince the garlic cloves (using a microplane for an extra fine texture). Having everything chopped and measured out beforehand will ensure a smooth cooking process for your **quinoa stuffed tomatoes**.

Heat a heavy skillet (cast iron works wonderfully for even heat) over medium-high heat. Once hot, swirl in a tablespoon or two of olive oil. For an oil-free stuffing, simply use a splash of vegetable broth. Sauté the finely diced onions and mushrooms until they start to soften and release their moisture, which usually takes about 4-5 minutes.

Next, add your chosen spices (Italian seasoning and a pinch of salt), the chopped tomato pulp you reserved earlier, and the minced garlic to the skillet. Stir constantly and cook for just about 30 seconds. The goal is to allow the garlic to become fragrant without burning, which would result in a bitter taste. This step builds the complex flavor base for your **vegan stuffed tomatoes**.

Now, introduce the cooked quinoa and nutritional yeast to the pan. Stir everything together thoroughly, ensuring the quinoa is well integrated with the sautéed vegetables and warmed through. The nutritional yeast will melt slightly, binding the ingredients and imparting its signature cheesy flavor to this **plant-based stuffed tomato** filling.

Once the filling is heated, turn off the heat. This is the perfect moment to add your chopped fresh greens, like kale, and your vibrant fresh herbs, such as basil. Adding them off the heat helps to preserve their bright color, fresh flavor, and delicate nutrients.

Stir the mixture well until all the ingredients are thoroughly incorporated and the greens have just begun to wilt from the residual heat. This **vegan and gluten-free stuffing** is incredibly versatile and delicious on its own! You can use this savory filling to bake and stuff almost any vegetable – think zucchini, bell peppers, large mushrooms, or even yellow summer squash. Try to resist the urge to eat too much of it straight from the pan… I know, it’s THAT good and tempting!

Now, carefully arrange your drained, hollowed-out tomatoes right side up in a small baking dish that will hold them snugly. Before filling, sprinkle a tiny pinch of salt and pepper into the inside of each tomato cavity to enhance their natural flavor. Then, use a small spoon to generously fill each tomato with the savory quinoa stuffing. If you have any excess filling left over, simply spoon it into the crevices around the tomatoes in the baking dish. It will bake up beautifully, becoming wonderfully crisp and flavorful while the tomatoes cook.

For an extra boost of cheesy flavor, sprinkle additional nutritional yeast over the tops of the filled tomatoes, if desired. Now, place your baking dish into a preheated 350°F (175°C) oven and bake for 25-35 minutes. The exact baking time may vary slightly depending on the size and ripeness of your tomatoes. You’ll know they’re ready when the tomatoes are soft and tender yet still hold their shape, and the delicious filling on top is gloriously crisp and piping hot. These **baked stuffed tomatoes** are a sight and taste to behold!
Exciting Stuffed Tomato Variations: Get Creative!
This **vegan stuffed tomato** recipe is incredibly adaptable! Feel free to customize the flavors to suit your preferences or what you have on hand:
- GREEK STUFFED TOMATOES: For a Mediterranean twist, follow the basic recipe, but when you add the cooked quinoa, also include one can of rinsed and drained cannellini beans, ½ cup of chopped Kalamata olives, finely diced bell pepper, and ¼ cup of fresh oregano. A squeeze of lemon juice after baking would also be delightful.
- ITALIAN STUFFED TOMATOES: Enhance the Italian flavors! When adding the chopped tomato pulp to the filling mixture, also stir in ¼ cup of pine nuts for a nutty crunch, ¼ cup of toasted bread crumbs for texture, ¼ cup of dry white wine for depth, and 2 tablespoons of miso paste for an extra layer of umami and saltiness.
- MAIN COURSE STUFFED TOMATOES: To transform these into a complete, hearty main meal, use super-large beefsteak or heirloom tomatoes. Increase the protein content by adding 1 cup of cooked lentils or your favorite beans (like black beans or chickpeas) to the stuffing recipe. You’ll need to increase the cooking time by an additional 10 minutes to ensure the larger tomatoes are thoroughly cooked and tender.
- SPICY STUFFED TOMATOES: If you love a kick, finely chop some jalapeños or serrano peppers (remove the seeds for less heat) and add them to the pan along with the onions and mushrooms. You can also boost the spice level by adding ½ teaspoon of red pepper flakes or ¼ teaspoon of cayenne pepper with the Italian spices.
Meal Prep & Storage Tips for Stuffed Tomatoes
These **vegan stuffed tomatoes** are fantastic for planning ahead:
- SERVE: Enjoy these versatile stuffed tomatoes as a light, satisfying lunch, a vibrant side dish, or a wholesome vegan main course.
- PREP AHEAD: To save time, you can prepare the quinoa stuffing and scoop out the tomatoes in advance. Store the stuffing in an airtight container and the hollowed tomatoes separately in the refrigerator for up to 2 days. When ready to bake, simply fill the tomatoes and follow the baking instructions. Alternatively, you can complete the entire recipe, then store the baked stuffed tomatoes, tightly covered, in the fridge for up to 3 days.
- STORE: Store any leftover baked stuffed tomatoes in an airtight container in the refrigerator for up to 5 days. They make for excellent leftovers! To reheat, place them in a preheated 350°F (175°C) oven for about 20 minutes, or until thoroughly heated through. This method helps maintain their texture better than microwave reheating.
- FREEZE: The quinoa stuffing can be made ahead and frozen for future use in an airtight container for up to 3 months. However, freezing the whole stuffed tomatoes is not recommended, as the tomatoes will become watery and mushy upon defrosting, losing their desirable texture. It’s best to prepare the tomato shells fresh when you’re ready to bake.
Debra’s Pro Tips for Perfect Stuffed Tomatoes

A few small details can elevate your **baked stuffed tomatoes** from good to absolutely fantastic:
- Don’t Skip Draining: After scooping out the tomato insides, always remember to turn the tomato shells upside down on a plate. This crucial step allows any excess liquid to drain out, preventing your **stuffed tomatoes** from tasting watery or becoming soggy during baking. If you happen to forget this step and realize it after making the stuffing, use a paper towel to carefully blot and sop up any remaining liquid before filling.
- Careful with the Base: When trimming a thin sliver off the bottom of the tomato to help it sit flat, be very careful not to cut all the way through the tomato wall. If you create a hole, the delicious stuffing will unfortunately fall out during baking!
- Stuff Them Generously: Don’t be shy! Load up those tomato cavities as full as you can. The generous filling is truly the best part of these **quinoa stuffed tomatoes**, ensuring every bite is packed with flavor and substance. Even if some spills over, it will crisp up beautifully in the baking dish.
Explore More Healthy Stuffed Vegetable Recipes
If you love the concept of healthy, flavorful stuffed vegetables, you’ll adore these other plant-based recipes:
- Meaty Vegan Stuffed Zucchini Boats
- Vegan Stuffed Peppers Lentils
- Gluten-Free Stuffed Mushrooms
- Stuffed Butternut Squash Recipe
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📖 Recipe

Vegan Stuffed Tomatoes
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Ingredients
- 2 lbs tomatoes
- ¼ teaspoon coarse sea salt
- ¼ tsp black pepper
- ½ cup yellow onion finely diced
- ½ cup shitake mushrooms finely diced
- ½ teaspoon coarse sea salt
- 1 tsp dried Italian seasoning
- 6 cloves garlic minced
- ¼ cup nutritional yeast
- 1 ½ cups cooked quinoa
- ½ cup kale roughly chopped
- ¼ cup fresh basil finely chopped
Instructions
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Preheat oven to 375°F (190°C).
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Carefully cut off the top ¼” of each tomato. Using a grapefruit spoon or small knife, gently scoop out the pulp and seeds, leaving the tomato walls intact. Season the inside of each tomato with a pinch of coarse salt and pepper. Place the hollowed tomatoes upside down on a plate to drain while you prepare the filling. Roughly chop the scooped-out tomato pulp and the reserved tomato tops, then set aside to use in the filling.
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Heat a large skillet (preferably cast iron) over medium-high heat. Swirl in olive oil (or vegetable broth for oil-free). Add the finely diced onions and mushrooms and sauté for about 4 minutes until softened. Sprinkle with ½ teaspoon coarse sea salt and 1 teaspoon dried Italian seasoning, stirring well. Next, add the chopped tomato pulp and minced garlic. Cook for only 30 seconds, stirring constantly, until the garlic becomes fragrant.
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Turn off the heat. Stir in the ¼ cup nutritional yeast and 1 ½ cups cooked quinoa. Mix thoroughly until all ingredients are well combined and evenly heated through.
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Add the ½ cup roughly chopped kale and ¼ cup finely chopped fresh basil to the skillet. Continue to mix until the greens are fully incorporated and have just begun to wilt from the residual heat.
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Taste the quinoa mixture for seasoning and adjust with more salt and pepper as desired.
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Arrange the drained tomato shells right side up in a baking dish that holds them snugly. Use a small spoon to generously fill each tomato with the prepared stuffing. If you have extra filling, place it in any gaps around the tomatoes in the dish.
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Bake for 25-35 minutes. The tomatoes should be tender but still hold their shape, and the filling on top will be crisp and golden. Larger tomatoes may require a slightly longer baking time.
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Serve warm or at room temperature, garnished with fresh basil if desired.
Notes
Reheat in a preheated 350°F (175°C) oven for 15-20 minutes, or until heated through. Avoid microwave reheating for best texture.
Nutrition
Note
The nutrition calculations were done using online tools. To obtain the most accurate representation of the nutritional information in any given recipe, you should calculate the nutritional information with the actual ingredients you used. You are ultimately responsible for ensuring that any nutritional information is accurate, complete and useful.